Index _ | A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U | V | W | Z _ _Runner (class in snakebids.bidsapp.run) A add_cli_arguments() (in module snakebids.bidsapp.hookspecs) (snakebids.plugins.BidsArgs method) (snakebids.plugins.CliConfig method) (snakebids.plugins.ComponentEdit method) (snakebids.plugins.Pybidsdb method) (snakebids.plugins.SnakemakeBidsApp method) after (snakebids.utils.utils.BidsEntity property) app() (in module snakebids.bidsapp) argument_groups (snakebids.bidsapp.run._Runner attribute) as_dict (snakebids.BidsDataset property) B before (snakebids.utils.utils.BidsEntity property) bids() (in module snakebids) bids_factory() (in module snakebids) BidsArgs (class in snakebids.plugins) BidsComponent (class in snakebids) BidsComponentRow (class in snakebids) BidsDataset (class in snakebids) BidsDatasetDict (class in snakebids) BidsEntity (class in snakebids.utils.utils) BidsFunction (class in snakebids) BidsParseError BidsPartialComponent (class in snakebids) BidsPathEntitySpec (class in snakebids.paths) BidsPathSpec (class in snakebids.paths) BidsTag (class in snakebids.utils.utils) BidsValidator (class in snakebids.plugins) BinaryOperator (class in snakebids.types) build_parser() (snakebids.bidsapp.run._Runner method) C CliConfig (class in snakebids.plugins) ComponentEdit (class in snakebids.plugins) config (snakebids.app.SnakeBidsApp property) (snakebids.bidsapp.run._Runner attribute) ConfigError create_descriptor() (snakebids.app.SnakeBidsApp method) create_empty() (snakebids.plugins.SnakemakeBidsApp class method) cwd (snakebids.plugins.SnakemakeBidsApp attribute) D DEPRECATION_FLAG (in module snakebids.utils.utils) dir (snakebids.paths.BidsPathEntitySpec attribute) DuplicateComponentError E entities (snakebids.BidsComponent property) (snakebids.BidsComponentRow property) (snakebids.BidsDataset property) entity (snakebids.paths.BidsPathEntitySpec attribute) entity_to_wildcard() (in module snakebids.utils.utils) expand() (snakebids.BidsComponent method) (snakebids.BidsComponentRow method) Expandable (class in snakebids.types) F filter() (snakebids.BidsComponent method) (snakebids.BidsComponentRow method) filter_list() (in module snakebids) filters (snakebids.types.InputConfig attribute) FilterSpec (class in snakebids.types) finalize_config() (in module snakebids.bidsapp.hookspecs) (snakebids.plugins.BidsValidator method) (snakebids.plugins.SnakemakeBidsApp method) force_output (snakebids.plugins.SnakemakeBidsApp attribute) from_iterable() (snakebids.BidsDataset class method) from_tag() (snakebids.utils.utils.BidsEntity class method) G generate_inputs() (in module snakebids) get_argv() (in module snakebids.bidsapp.hookspecs) get_filtered_ziplist_index() (in module snakebids) get_first_dir() (in module snakebids.utils.utils) get_wildcard_dict() (in module snakebids.utils.utils) glob_wildcards() (in module snakebids.utils.snakemake_io) H handle_unknown_args() (in module snakebids.bidsapp.hookspecs) (snakebids.plugins.SnakemakeBidsApp method) I initialize_config() (in module snakebids.bidsapp.hookspecs) (snakebids.plugins.SnakemakeBidsApp method) input_lists (snakebids.BidsComponent property) (snakebids.BidsDataset property) input_name (snakebids.BidsComponent property) input_path (snakebids.BidsComponent property) (snakebids.BidsDataset property) input_wildcards (snakebids.BidsComponent property) (snakebids.BidsDataset property) input_zip_lists (snakebids.BidsComponent property) (snakebids.BidsDataset property) InputConfig (class in snakebids.types) InputsConfig (class in snakebids.types) L latest() (in module snakebids.paths.specs) layout (snakebids.BidsDataset attribute) M match (snakebids.utils.utils.BidsEntity property) matches_any() (in module snakebids.utils.utils) MisspecifiedCliFilterError module snakebids snakebids.app snakebids.bidsapp snakebids.bidsapp.hookspecs snakebids.exceptions snakebids.paths.specs snakebids.types snakebids.utils.snakemake_io snakebids.utils.utils MultiSelectable (class in snakebids.types) N name (snakebids.BidsComponent attribute) normalize() (snakebids.utils.utils.BidsEntity class method) O OptionalFilterType (class in snakebids.types) P parse_args() (snakebids.bidsapp.run._Runner method) parser (snakebids.app.SnakeBidsApp property) (snakebids.bidsapp.run._Runner attribute) path (snakebids.BidsComponent attribute) (snakebids.BidsDataset property) pformat() (snakebids.BidsComponent method) (snakebids.BidsDataset method) pm (snakebids.bidsapp.run._Runner attribute) property_alias() (in module snakebids.utils.utils) Pybidsdb (class in snakebids.plugins) PybidsError R read_bids_tags() (in module snakebids.utils.utils) regex (snakebids.utils.utils.BidsEntity property) regex() (in module snakebids.utils.snakemake_io) run() (in module snakebids.bidsapp.hookspecs) (snakebids.bidsapp.run._Runner method) (snakebids.plugins.SnakemakeBidsApp method) run_snakemake() (snakebids.app.SnakeBidsApp method) RunError S sessions (snakebids.BidsDataset property) set_bids_spec() (in module snakebids) snakebids module snakebids.app module snakebids.bidsapp module snakebids.bidsapp.hookimpl() (in module snakebids.plugins) snakebids.bidsapp.hookspecs module snakebids.exceptions module snakebids.paths.specs module snakebids.types module snakebids.utils.snakemake_io module snakebids.utils.utils module SnakeBidsApp (class in snakebids.app) SnakebidsPluginError SnakemakeBidsApp (class in snakebids.plugins) subj_wildcards (snakebids.BidsDataset property) subjects (snakebids.BidsDataset property) surround() (in module snakebids.utils.utils) T tag (snakebids.paths.BidsPathEntitySpec attribute) (snakebids.utils.utils.BidsEntity property) text_fold() (in module snakebids.utils.utils) to_resolved_path() (in module snakebids.utils.utils) U update_cli_namespace() (in module snakebids.bidsapp.hookspecs) (snakebids.plugins.ComponentEdit method) (snakebids.plugins.Pybidsdb method) (snakebids.plugins.SnakemakeBidsApp method) update_wildcard_constraints() (in module snakebids.utils.snakemake_io) V v0_0_0() (in module snakebids.paths.specs) v0_11_0() (in module snakebids.paths.specs) W wildcard (snakebids.utils.utils.BidsEntity property) wildcards (snakebids.BidsComponent property) (snakebids.BidsComponentRow property) (snakebids.BidsDataset property) (snakebids.types.InputConfig attribute) Z zip_list_eq() (in module snakebids.utils.utils) zip_lists (snakebids.BidsComponent property) (snakebids.BidsDataset property) ZipList (class in snakebids.types) ZipListLike (class in snakebids.types)